rs8254922 SNP Detail

Summary

• ID
  rs8254922
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:46142872 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                                              Ttaga
  gggcttgcct tgcatgcaca gagctctggg tttgtctcag cacagagtaa cagtggtgga
  ccatccttgn aacccccagc acttgggaga tggggcagaa agatcagagn tcatntgagt
  ctagcctggg ctagtggaga cactgtctcc aaataaaata aATACAAACA AGNACTGGCA
  AGATGGCTTA GCTAGTAGAT AAATACAAAC AAgnactggc aagatggctt agctagtaga
  K
  annnncgcta cactaatcct ggtgacctga gtttttgatc tttgggacct atatggtgga
  aaagagaaca gatacntgna anttgnccnc tatnttctnc aAAAGAGAAC AGATACCTGC
  AAATTGTCCT CTNATCTCCA CACATGTTCT GTGGCA                          
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	SPRET/EiJ
ss12750972	L04149_DA289_5	ROCHEBIO	RPAMM	f	SNP	T	G	G	G	G	G	G	G	T	G	T	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	SPRET/EiJ
rs8254922					SNP	T	G	G	G	G	G	G	G	T	G	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:46142872 () rs orientation: reverse

Symbol	Name	Function Class
Apoa1	apolipoprotein A-I	1105 bp downstream
Apoc3	apolipoprotein C-III	1476 bp downstream
Cpgi21701	CpG island 21701	1069 bp distal
D9Mit93	DNA segment, Chr 9, Massachusetts Institute of Technology 93	1781 bp proximal
Rr195183	regulatory region 195183	1872 bp distal
Rr206362	regulatory region 206362	471 bp distal
Rr206363	regulatory region 206363	1928 bp proximal
Tssr84847	transcription start site region 84847	1666 bp downstream
Tssr84848	transcription start site region 84848	1588 bp downstream
Tssr84849	transcription start site region 84849	1552 bp downstream
Tssr84850	transcription start site region 84850	1510 bp downstream
Tssr84851	transcription start site region 84851	1475 bp downstream
Tssr84852	transcription start site region 84852	1378 bp downstream
Tssr84853	transcription start site region 84853	1344 bp downstream
Tssr84854	transcription start site region 84854	1331 bp downstream
Tssr84855	transcription start site region 84855	1311 bp downstream
Tssr84856	transcription start site region 84856	1300 bp downstream
Tssr84857	transcription start site region 84857	1178 bp downstream
Tssr84858	transcription start site region 84858	1141 bp downstream
Tssr84859	transcription start site region 84859	1558 bp upstream
Tssr84860	transcription start site region 84860	1697 bp upstream
Tssr84861	transcription start site region 84861	1743 bp upstream
Tssr89313	transcription start site region 89313	1599 bp upstream
Tssr89314	transcription start site region 89314	1571 bp upstream
Tssr89315	transcription start site region 89315	1548 bp upstream
Tssr89316	transcription start site region 89316	1528 bp upstream
Tssr89317	transcription start site region 89317	1519 bp upstream
Tssr89318	transcription start site region 89318	1495 bp upstream
Tssr89319	transcription start site region 89319	1485 bp upstream
Tssr89320	transcription start site region 89320	1472 bp upstream
Tssr89321	transcription start site region 89321	1447 bp upstream
Tssr89322	transcription start site region 89322	1364 bp upstream
Tssr89323	transcription start site region 89323	1312 bp upstream
Tssr89324	transcription start site region 89324	1284 bp upstream
Tssr89325	transcription start site region 89325	1259 bp upstream
Tssr89326	transcription start site region 89326	1225 bp upstream
Tssr89327	transcription start site region 89327	1111 bp upstream
Tssr89328	transcription start site region 89328	1525 bp downstream
Tssr89329	transcription start site region 89329	1596 bp downstream
Tssr89330	transcription start site region 89330	1642 bp downstream
Tssr89331	transcription start site region 89331	1675 bp downstream
Tssr89332	transcription start site region 89332	1750 bp downstream