rs8254923 SNP Detail

Summary

• ID
  rs8254923
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:46142870 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GGCAA GATGGCTTAG CTAGTAGAGA
  M
  GCTCGCTACA CTAATCCTGG TGACC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	SPRET/EiJ
ss12750973	L04149_DA289_6	ROCHEBIO	RPAMM	f	SNP	A	C	C	C	C	C	C	C	A	C	A	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	SPRET/EiJ
rs8254923					SNP	A	C	C	C	C	C	C	C	A	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:46142870 () rs orientation: reverse

Symbol	Name	Function Class
Apoa1	apolipoprotein A-I	1103 bp downstream
Apoc3	apolipoprotein C-III	1478 bp downstream
Rr678096	regulatory region 678096	1531 bp distal
Rr678097	regulatory region 678097	1089 bp proximal
Tssr84847	transcription start site region 84847	1664 bp downstream
Tssr84848	transcription start site region 84848	1586 bp downstream
Tssr84849	transcription start site region 84849	1550 bp downstream
Tssr84850	transcription start site region 84850	1508 bp downstream
Tssr84851	transcription start site region 84851	1473 bp downstream
Tssr84852	transcription start site region 84852	1376 bp downstream
Tssr84853	transcription start site region 84853	1342 bp downstream
Tssr84854	transcription start site region 84854	1329 bp downstream
Tssr84855	transcription start site region 84855	1309 bp downstream
Tssr84856	transcription start site region 84856	1298 bp downstream
Tssr84857	transcription start site region 84857	1176 bp downstream
Tssr84858	transcription start site region 84858	1139 bp downstream
Tssr84859	transcription start site region 84859	1560 bp upstream
Tssr84860	transcription start site region 84860	1699 bp upstream
Tssr84861	transcription start site region 84861	1745 bp upstream
Tssr89313	transcription start site region 89313	1597 bp upstream
Tssr89314	transcription start site region 89314	1569 bp upstream
Tssr89315	transcription start site region 89315	1546 bp upstream
Tssr89316	transcription start site region 89316	1526 bp upstream
Tssr89317	transcription start site region 89317	1517 bp upstream
Tssr89318	transcription start site region 89318	1493 bp upstream
Tssr89319	transcription start site region 89319	1483 bp upstream
Tssr89320	transcription start site region 89320	1470 bp upstream
Tssr89321	transcription start site region 89321	1445 bp upstream
Tssr89322	transcription start site region 89322	1362 bp upstream
Tssr89323	transcription start site region 89323	1310 bp upstream
Tssr89324	transcription start site region 89324	1282 bp upstream
Tssr89325	transcription start site region 89325	1257 bp upstream
Tssr89326	transcription start site region 89326	1223 bp upstream
Tssr89327	transcription start site region 89327	1109 bp upstream
Tssr89328	transcription start site region 89328	1527 bp downstream
Tssr89329	transcription start site region 89329	1598 bp downstream
Tssr89330	transcription start site region 89330	1644 bp downstream
Tssr89331	transcription start site region 89331	1677 bp downstream
Tssr89332	transcription start site region 89332	1752 bp downstream