rs8254926 SNP Detail

Summary

• ID
  rs8254926
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:46142867 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                                         Ttagagggct
  tgccttgcat gcacagagct ctgggtttgt ctcagcacag agtaacagtg gtggaccatc
  cttgnaaccc ccagcacttg ggagatgggg cagaaagatc agagntcatn tgagtctagc
  ctgggctagt ggagacactg tctccaaata aaataaATAC AAACAAGNAC TGGCAAGATG
  GCTTAGCTAG TAGATAAATA CAAACAAgna ctggcaagat ggcttagcta gtaganannn
  W
  cgctacacta atcctggtga cctgagtttt tgatctttgg gacctatatg gtggaaaaga
  gaacagatac ntgnaanttg nccnctatnt tctncaAAAG AGAACAGATA CCTGCAAATT
  GTCCTCTNAT CTCCACACAT GTTCTGTGGC A                               
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	SPRET/EiJ
ss12750976	L04149_DA289_9	ROCHEBIO	RPAMM	f	SNP	A	T	T	T	T	T	T	T	A	T	A	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	SPRET/EiJ
rs8254926					SNP	A	T	T	T	T	T	T	T	A	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:46142867 () rs orientation: reverse

Symbol	Name	Function Class
Apoa1	apolipoprotein A-I	1100 bp downstream
Apoc3	apolipoprotein C-III	1481 bp downstream
Cpgi21701	CpG island 21701	1064 bp distal
D9Mit93	DNA segment, Chr 9, Massachusetts Institute of Technology 93	1786 bp proximal
Rr195183	regulatory region 195183	1867 bp distal
Rr206362	regulatory region 206362	466 bp distal
Rr206363	regulatory region 206363	1933 bp proximal
Tssr84847	transcription start site region 84847	1661 bp downstream
Tssr84848	transcription start site region 84848	1583 bp downstream
Tssr84849	transcription start site region 84849	1547 bp downstream
Tssr84850	transcription start site region 84850	1505 bp downstream
Tssr84851	transcription start site region 84851	1470 bp downstream
Tssr84852	transcription start site region 84852	1373 bp downstream
Tssr84853	transcription start site region 84853	1339 bp downstream
Tssr84854	transcription start site region 84854	1326 bp downstream
Tssr84855	transcription start site region 84855	1306 bp downstream
Tssr84856	transcription start site region 84856	1295 bp downstream
Tssr84857	transcription start site region 84857	1173 bp downstream
Tssr84858	transcription start site region 84858	1136 bp downstream
Tssr84859	transcription start site region 84859	1563 bp upstream
Tssr84860	transcription start site region 84860	1702 bp upstream
Tssr84861	transcription start site region 84861	1748 bp upstream
Tssr89313	transcription start site region 89313	1594 bp upstream
Tssr89314	transcription start site region 89314	1566 bp upstream
Tssr89315	transcription start site region 89315	1543 bp upstream
Tssr89316	transcription start site region 89316	1523 bp upstream
Tssr89317	transcription start site region 89317	1514 bp upstream
Tssr89318	transcription start site region 89318	1490 bp upstream
Tssr89319	transcription start site region 89319	1480 bp upstream
Tssr89320	transcription start site region 89320	1467 bp upstream
Tssr89321	transcription start site region 89321	1442 bp upstream
Tssr89322	transcription start site region 89322	1359 bp upstream
Tssr89323	transcription start site region 89323	1307 bp upstream
Tssr89324	transcription start site region 89324	1279 bp upstream
Tssr89325	transcription start site region 89325	1254 bp upstream
Tssr89326	transcription start site region 89326	1220 bp upstream
Tssr89327	transcription start site region 89327	1106 bp upstream
Tssr89328	transcription start site region 89328	1530 bp downstream
Tssr89329	transcription start site region 89329	1601 bp downstream
Tssr89330	transcription start site region 89330	1647 bp downstream
Tssr89331	transcription start site region 89331	1680 bp downstream
Tssr89332	transcription start site region 89332	1755 bp downstream