rs8255152 SNP Detail

Summary

• ID
  rs8255152
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:60937943 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              CAATCTCCCA GAGTCTCTTT
  CAAAACCTCT TTCTGCCTGG AGACTGCTGA CGTCACATCT GGTTTTAGTT CCCCATAGGC
  AAGCAAATAG GCAGCTTGGG GGTTGGGGGA ACAAGGCAAG AAGGCAAGCA AATTCTAACC
  CTGTTTGGTT TTTTTTTGGG GGGGGGGGTT GGGAGTGTAA GGCTGAGGTC ATTTAGGGAC
  S
  GGGAGAGGAG CCCAGGGCTA TCTGGATGGC TGTGGCAACC ATGTAACACA TGGACCAGGA
  ACTCCATCTC TGTGAGCAGC TTTTGGGATG GCAGGCAGCT CTCTTCCCCT ACACACATAC
  AGAAAGGCTC ATCCCGTGTC AGGTGTGGAC TCCGGTCTGG TGAGGCCCTG CTTGCCTGGG
  CTCATACACG TCTTCTAGCA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	AKR/J	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ
ss12751211	X13414_DA579_4	ROCHEBIO	RPAMM	f	SNP	C	C	C	G	C	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	AKR/J	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ
rs8255152					SNP	C	C	C	G	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:60937943 () rs orientation: reverse

Symbol	Name	Function Class
Cd74	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	within coordinates
D18Mit77	DNA segment, Chr 18, Massachusetts Institute of Technology 77	630 bp distal
Rr405669	regulatory region 405669	1023 bp downstream
Rr405670	regulatory region 405670	within coordinates
Rr405671	regulatory region 405671	785 bp upstream
Rr405672	regulatory region 405672	1641 bp upstream
Rr538682	regulatory region 538682	1013 bp distal
Tssr151326	transcription start site region 151326	1015 bp downstream
Tssr151327	transcription start site region 151327	1003 bp downstream
Tssr151328	transcription start site region 151328	135 bp upstream
Tssr151329	transcription start site region 151329	207 bp upstream
Tssr151330	transcription start site region 151330	1071 bp upstream
Tssr151331	transcription start site region 151331	1107 bp upstream
Tssr153492	transcription start site region 153492	857 bp upstream