rs8255159 SNP Detail

Summary

• ID
  rs8255159
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:60938451 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                                               TCAA
  GGCCAAGTAG CTTGGTCTAC TCCGTGANTT CCAGCCCAAC TACATAGTAA AACNAGCCTT
  W
  AAAAAAAGGC ACAGGCAGAG GGAGATAACA AAAATGCCCA ACTCCTAGCT ACAGTAACTG
  TAGGAATTAA GATAGAATCT GTAGTTTGTT TATCATTANC GTGATNATCA NTGTCGTCTG
  AGGACCGGTN GAAGGAACCC AATAGATGAA CAGTTCTTAT AGCCATTGCT GTTAAGCAGT
  GGGACCCAAA AAAGAGGCTG TGGTTTTTCT GTGGTCACCC ATGACAGCAG TAAAAGTNAC
  TNCAGAATNC CCCATTGCTC TAAGAATCCA TATCTGGNTA CCTTCTTGCT AGAATGCCAT
  TCGTGGGTCA GTCTCCAA                                              
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	AKR/J	BALB/cByJ	NZB/BlNJ	NZW/Lac
ss12751218	X13414_DA580_2	ROCHEBIO	RPAMM	f	SNP	T	A	T	A	A
SNP Consensus Information
SNP					Consensus Type	A/HeJ	AKR/J	BALB/cByJ	NZB/BlNJ	NZW/Lac
rs8255159					SNP	T	A	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:60938451 () rs orientation: reverse

Symbol	Name	Function Class
Cd74	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	within coordinates
D18Mit77	DNA segment, Chr 18, Massachusetts Institute of Technology 77	1138 bp distal
Rr405669	regulatory region 405669	1531 bp downstream
Rr405670	regulatory region 405670	220 bp downstream
Rr405671	regulatory region 405671	277 bp upstream
Rr405672	regulatory region 405672	1133 bp upstream
Rr538682	regulatory region 538682	1521 bp distal
Tssr151326	transcription start site region 151326	1523 bp downstream
Tssr151327	transcription start site region 151327	1511 bp downstream
Tssr151328	transcription start site region 151328	362 bp downstream
Tssr151329	transcription start site region 151329	291 bp downstream
Tssr151330	transcription start site region 151330	563 bp upstream
Tssr151331	transcription start site region 151331	599 bp upstream
Tssr151332	transcription start site region 151332	1618 bp upstream
Tssr153492	transcription start site region 153492	1365 bp upstream