rs8255161 SNP Detail

Summary

• ID
  rs8255161
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:60938887 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

               GCCTTTAG GTTGGNTGGG TTTTGGTTTT GATTGAGNGC CAACTCTTGC
  CACCTCCTGG TTTTACTTCC TCCTTTGTAC TTCCTCCTTG TGTTTNAAAA AAAAAAAAAT
  TGACTTAAGT CAGAAACCAA CCAGAGCCGT CAGGAATCAT GACGCACATG TTGCCAGGCA
  R
  AAGTGTTCAC AAAAATGCCC CAAATCAAAC CTGTAGGGAA TGGCCCTGGA NCTTAAGGCC
  TGGTCAGTCT TGGAAGCAGT AACTGAAGTA AAGTGAAGNT TGTCATGGAT TTGNTGAATA
  CACAGCCCTC ANTGAGAGGC CTGAGGTCAN AGNGCTCCTA CCTCCTCGCT NCACAAATGA
  GGCCTCTACA GGACCCAAAC AGGACTCAAA CTGGTCCTGA CTAA                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C3H/HeJ
ss12751224	X13414_DA581_2	ROCHEBIO	RPAMM	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	C3H/HeJ
rs8255161					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:60938887 () rs orientation: reverse

Symbol	Name	Function Class
Cd74	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	within coordinates
D18Mit77	DNA segment, Chr 18, Massachusetts Institute of Technology 77	1574 bp distal
Rr405669	regulatory region 405669	1967 bp downstream
Rr405670	regulatory region 405670	656 bp downstream
Rr405671	regulatory region 405671	within coordinates
Rr405672	regulatory region 405672	697 bp upstream
Tssr5344	transcription start site region 5344	1856 bp upstream
Tssr151326	transcription start site region 151326	1959 bp downstream
Tssr151327	transcription start site region 151327	1947 bp downstream
Tssr151328	transcription start site region 151328	798 bp downstream
Tssr151329	transcription start site region 151329	727 bp downstream
Tssr151330	transcription start site region 151330	127 bp upstream
Tssr151331	transcription start site region 151331	163 bp upstream
Tssr151332	transcription start site region 151332	1182 bp upstream
Tssr151333	transcription start site region 151333	1720 bp upstream
Tssr153492	transcription start site region 153492	1801 bp upstream