rs8255162 SNP Detail

Summary

• ID
  rs8255162
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:60938836 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              TCTTGGTTCT GATTGAGTGC
  CAACTCTTGC CACCTCCTGG TTTTACTTCC TCCTTTGTAC TTCCTCCTTG TGTTTAAAAA
  AAAAAAAATT GACTTAAGTC AGAAACCAAC CAGAGCCGTC AGGAATCATG ACGCACATGT
  TGCCAGGCAG AAGTGTTCAC AAAAATGCCC CAAATCAAAC CTGTAGGGAA TGGCCCTGGA
  S
  CTTAAGGCCT GGTCAGTCTT GGAAGCAGTA ACTGAAGTAA AGTGAAGATT GTCATGGATT
  TGTTGAATAC ACAGCCCTCA ATGAGAGGCC TGAGGTCAGA GGGCTCCTAC CTCCTCGCTC
  CACAAATGAG GCCTCTACAG GACCCAGACA GGACTCAGAC TGGTCCTGAC TCAAATGCTA
  TGCCCAACAC TCAGCAGCTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZW/LacJ	SPRET/EiJ	WSB/EiJ
ss12751225	X13414_DA581_3	ROCHEBIO	RPAMM	f	SNP	C			C	C	C		C	C	G	C				C
ss12752277	X13414_JC650_3	ROCHEBIO	RPAMM	r	SNP	G		G	G		G		G	G	C					G			C
ss50416922	NES13460492	PERLEGEN	MM_PANEL2	r	SNP		G	G	G	G		G	G			G	G	C	C		C	G		G
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZW/LacJ	SPRET/EiJ	WSB/EiJ
rs8255162					SNP	C	C	C	C	C	C	C	C	C	G	C	C	G	G	C	G	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50416922	NES13460492	PERLEGEN	MM_PANEL	r	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:60938836 () rs orientation: reverse

Symbol	Name	Function Class
Cd74	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	within coordinates
D18Mit77	DNA segment, Chr 18, Massachusetts Institute of Technology 77	1523 bp distal
Rr405669	regulatory region 405669	1916 bp downstream
Rr405670	regulatory region 405670	605 bp downstream
Rr405671	regulatory region 405671	within coordinates
Rr405672	regulatory region 405672	748 bp upstream
Rr538682	regulatory region 538682	1906 bp distal
Tssr5344	transcription start site region 5344	1907 bp upstream
Tssr151326	transcription start site region 151326	1908 bp downstream
Tssr151327	transcription start site region 151327	1896 bp downstream
Tssr151328	transcription start site region 151328	747 bp downstream
Tssr151329	transcription start site region 151329	676 bp downstream
Tssr151330	transcription start site region 151330	178 bp upstream
Tssr151331	transcription start site region 151331	214 bp upstream
Tssr151332	transcription start site region 151332	1233 bp upstream
Tssr151333	transcription start site region 151333	1771 bp upstream
Tssr153492	transcription start site region 153492	1750 bp upstream