rs8255163 SNP Detail

Summary

• ID
  rs8255163
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:60938788 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              CCTCCTTTGT ACTTCCTCCT
  TGTGTTTAAA AAAAAAAAAA TTGACTTAAG TCAGAAACCA ACCAGAGCCG TCAGGAATCA
  TGACGCACAT GTTGCCAGGC AGAAGTGTTC ACAAAAATGC CCCAAATCAA ACCTGTAGGG
  AATGGCCCTG GACCTTAAGG CCTGGTCAGT CTTGGAAGCA GTAACTGAAG TAAAGTGAAG
  W
  TTGTCATGGA TTTGTTGAAT ACACAGCCCT CAATGAGAGG CCTGAGGTCA GAGGGCTCCT
  ACCTCCTCGC TCCACAAATG AGGCCTCTAC AGGACCCAGA CAGGACTCAG ACTGGTCCTG
  ACTCAAATGC TATGCCCAAC ACTCAGCAGC TGAGATAACC TGGAAGTTAA TTACTAGATG
  AGCTCAAATT CCTTCTGTGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss12751226	X13414_DA581_4	ROCHEBIO	RPAMM	f	SNP	A			A	T	T		A	A	A	A					A
ss12752275	X13414_JC650_1	ROCHEBIO	RPAMM	r	SNP	T		A	T		A		T	T	T						T
ss50416924	NES13460491	PERLEGEN	MM_PANEL2	r	SNP		T	A	T	A		T	T			T	T	T		T		T	T	T		T
ss147250031	ENSMUSSNP6071645	ENSEMBL	ENSEMBL_Sanger	r	SNP			A								T
ss325640659	CHEV_18_60965370	CHEVERUD	SCREENING_POP	r	SNP														T						A
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs8255163					SNP	A	A	T	A	T	T	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50416924	NES13460491	PERLEGEN	MM_PANEL	r	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:60938788 () rs orientation: reverse

Symbol	Name	Function Class
Cd74	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	within coordinates
D18Mit77	DNA segment, Chr 18, Massachusetts Institute of Technology 77	1475 bp distal
Rr405669	regulatory region 405669	1868 bp downstream
Rr405670	regulatory region 405670	557 bp downstream
Rr405671	regulatory region 405671	within coordinates
Rr405672	regulatory region 405672	796 bp upstream
Rr538682	regulatory region 538682	1858 bp distal
Tssr5344	transcription start site region 5344	1955 bp upstream
Tssr151326	transcription start site region 151326	1860 bp downstream
Tssr151327	transcription start site region 151327	1848 bp downstream
Tssr151328	transcription start site region 151328	699 bp downstream
Tssr151329	transcription start site region 151329	628 bp downstream
Tssr151330	transcription start site region 151330	226 bp upstream
Tssr151331	transcription start site region 151331	262 bp upstream
Tssr151332	transcription start site region 151332	1281 bp upstream
Tssr151333	transcription start site region 151333	1819 bp upstream
Tssr153492	transcription start site region 153492	1702 bp upstream