rs8255164 SNP Detail

Summary

• ID
  rs8255164
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:60938773 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              CTCCTTGTGT TTAAAAAAAA
  AAAAATTGAC TTAAGTCAGA AACCAACCAG AGCCGTCAGG AATCATGACG CACATGTTGC
  CAGGCAGAAG TGTTCACAAA AATGCCCCAA ATCAAACCTG TAGGGAATGG CCCTGGACCT
  TAAGGCCTGG TCAGTCTTGG AAGCAGTAAC TGAAGTAAAG TGAAGATTGT CATGGATTTG
  W
  TGAATACACA GCCCTCAATG AGAGGCCTGA GGTCAGAGGG CTCCTACCTC CTCGCTCCAC
  AAATGAGGCC TCTACAGGAC CCAGACAGGA CTCAGACTGG TCCTGACTCA AATGCTATGC
  CCAACACTCA GCAGCTGAGA TAACCTGGAA GTTAATTACT AGATGAGCTC AAATTCCTTC
  TGTGTAATAA TAATGCCAGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss12751227	X13414_DA581_5	ROCHEBIO	RPAMM	f	SNP	T			T	T	T		T	T	A	T				T
ss50416926	NES13460490	PERLEGEN	MM_PANEL2	r	SNP		A	A	A	A		A	A			A	A	T	T		T	A	A	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs8255164					SNP	T	T	T	T	T	T	T	T	T	A	T	T	A	A	T	A	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50416926	NES13460490	PERLEGEN	MM_PANEL	r	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:60938773 () rs orientation: reverse

Symbol	Name	Function Class
Cd74	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	within coordinates
D18Mit77	DNA segment, Chr 18, Massachusetts Institute of Technology 77	1460 bp distal
Rr405669	regulatory region 405669	1853 bp downstream
Rr405670	regulatory region 405670	542 bp downstream
Rr405671	regulatory region 405671	within coordinates
Rr405672	regulatory region 405672	811 bp upstream
Tssr5344	transcription start site region 5344	1970 bp upstream
Tssr151326	transcription start site region 151326	1845 bp downstream
Tssr151327	transcription start site region 151327	1833 bp downstream
Tssr151328	transcription start site region 151328	684 bp downstream
Tssr151329	transcription start site region 151329	613 bp downstream
Tssr151330	transcription start site region 151330	241 bp upstream
Tssr151331	transcription start site region 151331	277 bp upstream
Tssr151332	transcription start site region 151332	1296 bp upstream
Tssr151333	transcription start site region 151333	1834 bp upstream
Tssr153492	transcription start site region 153492	1687 bp upstream