rs8255165 SNP Detail

Summary

• ID
  rs8255165
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:60938755 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GGATT TGTTGAATAC ACAGCCCTCA
  M
  TGAGAGGCCT GAGGTCAGAG GGCTC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MRL/MpJ	SM/J
ss12751228	X13414_DA581_6	ROCHEBIO	RPAMM	f	SNP	A	C		A	C	C	A	A	A	A		A
ss147250027	ENSMUSSNP5382787	ENSEMBL	ENSEMBL_Sanger	r	SNP			G							T
ss325640658	CHEV_18_60965337	CHEVERUD	SCREENING_POP	r	SNP											T		G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MRL/MpJ	SM/J
rs8255165					SNP	A	C	C	A	C	C	A	A	A	A	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:60938755 () rs orientation: reverse

Symbol	Name	Function Class
Cd74	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	within coordinates
D18Mit77	DNA segment, Chr 18, Massachusetts Institute of Technology 77	1442 bp distal
Rr405669	regulatory region 405669	1835 bp downstream
Rr405670	regulatory region 405670	524 bp downstream
Rr405671	regulatory region 405671	within coordinates
Rr405672	regulatory region 405672	829 bp upstream
Tssr5344	transcription start site region 5344	1988 bp upstream
Tssr151326	transcription start site region 151326	1827 bp downstream
Tssr151327	transcription start site region 151327	1815 bp downstream
Tssr151328	transcription start site region 151328	666 bp downstream
Tssr151329	transcription start site region 151329	595 bp downstream
Tssr151330	transcription start site region 151330	259 bp upstream
Tssr151331	transcription start site region 151331	295 bp upstream
Tssr151332	transcription start site region 151332	1314 bp upstream
Tssr151333	transcription start site region 151333	1852 bp upstream
Tssr153492	transcription start site region 153492	1669 bp upstream