rs8255166 SNP Detail

Summary

• ID
  rs8255166
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:60938737 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                                GCCTTTAG GTTGGNTGGG
  TTTTGGTTTT GATTGAGNGC CAACTCTTGC CACCTCCTGG TTTTACTTCC TCCTTTGTAC
  TTCCTCCTTG TGTTTNAAAA AAAAAAAAAT TGACTTAAGT CAGAAACCAA CCAGAGCCGT
  CAGGAATCAT GACGCACATG TTGCCAGGCA NAAGTGTTCA CAAAAATGCC CCAAATCAAA
  CCTGTAGGGA ATGGCCCTGG ANCTTAAGGC CTGGTCAGTC TTGGAAGCAG TAACTGAAGT
  AAAGTGAAGN TTGTCATGGA TTTGNTGAAT ACACAGCCCT CANTGAGAGG CCTGAGGTCA
  R
  AGNGCTCCTA CCTCCTCGCT NCACAAATGA GGCCTCTACA GGACCCAAAC AGGACTCAAA
  CTGGTCCTGA CTAA                                                  
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	C3H/HeJ	DBA/2J	MRL/MpJ	NZW/Lac
ss12751229	X13414_DA581_7	ROCHEBIO	RPAMM	f	SNP	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	C3H/HeJ	DBA/2J	MRL/MpJ	NZW/Lac
rs8255166					SNP	G	G	A	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:60938737 () rs orientation: reverse

Symbol	Name	Function Class
Cd74	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	within coordinates
D18Mit77	DNA segment, Chr 18, Massachusetts Institute of Technology 77	1424 bp distal
Rr405669	regulatory region 405669	1817 bp downstream
Rr405670	regulatory region 405670	506 bp downstream
Rr405671	regulatory region 405671	within coordinates
Rr405672	regulatory region 405672	847 bp upstream
Rr538682	regulatory region 538682	1807 bp distal
Tssr151326	transcription start site region 151326	1809 bp downstream
Tssr151327	transcription start site region 151327	1797 bp downstream
Tssr151328	transcription start site region 151328	648 bp downstream
Tssr151329	transcription start site region 151329	577 bp downstream
Tssr151330	transcription start site region 151330	277 bp upstream
Tssr151331	transcription start site region 151331	313 bp upstream
Tssr151332	transcription start site region 151332	1332 bp upstream
Tssr151333	transcription start site region 151333	1870 bp upstream
Tssr153492	transcription start site region 153492	1651 bp upstream