rs8255169 SNP Detail

Summary

• ID
  rs8255169
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:60939365 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        ACCAG GTTAGGGCTT GGAATGAGCG
  R
  TTGTTAAATA ACGAAGAGAT GAAAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SM/J	SPRET/EiJ
ss12751234	X13414_DA582_3	ROCHEBIO	RPAMM	f	SNP	G		A	A	G		A	A	G	G	G	G		G		G
ss12752280	X13414_JC651_1	ROCHEBIO	RPAMM	f	SNP	G			A	G	G		A	G	G	G	G			G			G
ss39627322	mCV24046048	ABI	CRAMUS_MOUSE	r	SNP		C		T						C		C
ss147250061	ENSMUSSNP3109662	ENSEMBL	ENSEMBL_Sanger	r	SNP		C		T								C
ss325640665	CHEV_18_60965947	CHEVERUD	SCREENING_POP	r	SNP													C				T
SNP Consensus Information
SNP					Consensus Type	129/Sv	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SM/J	SPRET/EiJ
rs8255169					SNP	G	G	A	A	G	G	A	A	G	G	G	G	G	G	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:60939365 () rs orientation: reverse

Symbol	Name	Function Class
Cd74	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	within coordinates
Rr405670	regulatory region 405670	1134 bp downstream
Rr405671	regulatory region 405671	336 bp downstream
Rr405672	regulatory region 405672	219 bp upstream
Tssr5344	transcription start site region 5344	1378 bp upstream
Tssr151328	transcription start site region 151328	1276 bp downstream
Tssr151329	transcription start site region 151329	1205 bp downstream
Tssr151330	transcription start site region 151330	325 bp downstream
Tssr151331	transcription start site region 151331	306 bp downstream
Tssr151332	transcription start site region 151332	704 bp upstream
Tssr151333	transcription start site region 151333	1242 bp upstream
Tssr151334	transcription start site region 151334	1606 bp upstream
Tssr151335	transcription start site region 151335	1615 bp upstream
Tssr151336	transcription start site region 151336	1649 bp upstream
Tssr151337	transcription start site region 151337	1703 bp upstream
Tssr151338	transcription start site region 151338	1759 bp upstream
Tssr151339	transcription start site region 151339	1938 bp upstream
Tssr153493	transcription start site region 153493	1762 bp downstream
Tssr153494	transcription start site region 153494	1784 bp downstream
Tssr153495	transcription start site region 153495	2000 bp downstream