rs8255170 SNP Detail

Summary

• ID
  rs8255170
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:60939353 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CTTGG AATGAGCGGT TGTTAAATAA
  Y
  GAAGAGATGA AACATAAATA ACGAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129X1/SvJ	A/HeJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MRL/MpJ	NZW/Lac	SM/J
ss12751235	X13414_DA582_4	ROCHEBIO	RPAMM	f	SNP	C		T	T	C	T	T	C	C	C	C		C	C
ss39608112	mCV24046055	ABI	CRAMUS_MOUSE	r	SNP		G		A					G		G
ss147250057	ENSMUSSNP441077	ENSEMBL	ENSEMBL_Sanger	r	SNP		G		A							G
ss325640664	CHEV_18_60965935	CHEVERUD	SCREENING_POP	r	SNP												G			A
SNP Consensus Information
SNP					Consensus Type	129/Sv	129X1/SvJ	A/HeJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MRL/MpJ	NZW/Lac	SM/J
rs8255170					SNP	C	C	T	T	C	T	T	C	C	C	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:60939353 () rs orientation: reverse

Symbol	Name	Function Class
Cd74	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	within coordinates
Rr405670	regulatory region 405670	1122 bp downstream
Rr405671	regulatory region 405671	324 bp downstream
Rr405672	regulatory region 405672	231 bp upstream
Tssr5344	transcription start site region 5344	1390 bp upstream
Tssr151328	transcription start site region 151328	1264 bp downstream
Tssr151329	transcription start site region 151329	1193 bp downstream
Tssr151330	transcription start site region 151330	313 bp downstream
Tssr151331	transcription start site region 151331	294 bp downstream
Tssr151332	transcription start site region 151332	716 bp upstream
Tssr151333	transcription start site region 151333	1254 bp upstream
Tssr151334	transcription start site region 151334	1618 bp upstream
Tssr151335	transcription start site region 151335	1627 bp upstream
Tssr151336	transcription start site region 151336	1661 bp upstream
Tssr151337	transcription start site region 151337	1715 bp upstream
Tssr151338	transcription start site region 151338	1771 bp upstream
Tssr151339	transcription start site region 151339	1950 bp upstream
Tssr153493	transcription start site region 153493	1774 bp downstream
Tssr153494	transcription start site region 153494	1796 bp downstream