rs8255238 SNP Detail

Summary

• ID
  rs8255238
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:4090911 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                          TTC AAATGCCCAG GCAGGGCCTT
  CACGTAGTCA TTCTTACCAT TCTCCTGCCA GGGAGACACC CAAAGATGTA CCATCCTCCC
  ACTGTCACAG TGCCCTGGGC ACTGGACTCC TGCTGCCCTG TAATGAATTC CAGATATANC
  Y
  CCCCCCCCCA GGGACATGGC CTACCACTAC CTACTTCCTG GGCTACCCTA CCCCCCAGAT
  TCAGGCTCAC ATAGTTTCTG TAGATCATGG TGCCATATTT GCCGCGAAGG TCCTCNACCC
  CATCATTCAC CATATCCACC TGGGCGGCCT CCCTNTGGTT TTTCCCATAA AGCCCTGCGG
  GTTGGGAGAG ACAGCATGAC TGATCCCTGA TTTCCTCAGG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C57BL/6J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12751312	U15654_JC1576_2	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/HeJ	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C57BL/6J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8255238					SNP	C	C	C	C	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:4090911 () rs orientation: forward

Symbol	Name	Function Class
Gstp2	glutathione S-transferase, pi 2	within coordinates
Rr357950	regulatory region 357950	1711 bp distal
Rr363269	regulatory region 363269	289 bp proximal
Tssr157438	transcription start site region 157438	1319 bp downstream
Tssr157439	transcription start site region 157439	1332 bp downstream