rs8255239 SNP Detail

Summary

• ID
  rs8255239
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:4091027 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCCA TATTTGCCGC GAAGGTCCTC
  Y
  ACCCCATCAT TCACCATATC CACCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12751313	U15654_JC1576_3	ROCHEBIO	RPAMM	f	SNP			C		C		C		C					C	C	T	C
ss24757337	Gstp1_JC6077_2	ROCHEBIO	RPAMM	f	SNP	C	C	C	C		C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8255239					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:4091027 () rs orientation: forward

Symbol	Name	Function Class
Gstp2	glutathione S-transferase, pi 2	within coordinates
Rr357950	regulatory region 357950	1827 bp distal
Rr357953	regulatory region 357953	1974 bp proximal
Rr363269	regulatory region 363269	173 bp proximal
Tssr157438	transcription start site region 157438	1203 bp downstream
Tssr157439	transcription start site region 157439	1216 bp downstream