rs8255641 SNP Detail

Summary

• ID
  rs8255641
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:78240621 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACTTGGCAG AAGTTTAACA
  CCTTCTGAAG TGTTCCTGGT TTGCCTCCAA AGAGAAGCCC TGACCATGAG AGGTACTGCA
  TGGGCATTGA CCTTCATTTA CTGAGTGGGC GTGGCTTTTC TCTTAAGATG GGACCCCAAG
  TCCTGCAGGC CAGTTTTCCT TAACATCTCT TCAGCAGCCT CCTCCTCTCC ACCCTCCATC
  W
  TTCTCCTTGT TCAGATATTT CCCCTCTGTC TTTGTTACCC TATCATAACC TCCTGATGGG
  CAGCTGCTCT CAGGCCTCCC TGTGTAACAG AATGTTTTCC CATCTGTTGT TCACTGCAGT
  TCTCTGTGGA AGGGAAGCCC ATTGTGTTCT GTAGGACCCA GGTCCTTCTC TGGTGTGGCT
  CAGCCTTCCA CAGGCCCAGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SM/J	SPRET/EiJ
ss12751738	Gsta1_4_JC5985_2	ROCHEBIO	RPAMM	f	SNP	A	A		A			A	A	A	T
ss12753721	Gsta1_4_JC6043_1	ROCHEBIO	RPAMM	f	SNP	A	A		A		A	A	A		T				A	A			T
ss24752699	Gsta1_JC6043_1	ROCHEBIO	RPAMM	f	SNP	A	A		A		A	A	A		T		A		A	A		A	T
ss24753660	Gsta1_JC5985_7	ROCHEBIO	RPAMM	r	SNP	T	T	T	T	T		T	T	T	A	T	T	T			T	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SM/J	SPRET/EiJ
rs8255641					SNP	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:78240621 () rs orientation: forward

Symbol	Name	Function Class
Gm70238	predicted gene, 70238	within coordinates
Gsta2	glutathione S-transferase, alpha 2 (Yc2)	within coordinates
Tssr2946	transcription start site region 2946	32 bp downstream