rs8255643 SNP Detail

Summary

• ID
  rs8255643
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:78240628 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAAGTTTA ACACCTTCTG
  AAGTGTTCCT GGTTTGCCTC CAAAGAGAAG CCCTGACCAT GAGAGGTACT GCATGGGCAT
  TGACCTTCAT TTACTGAGTG GGCGTGGCTT TTCTCTTAAG ATGGGACCCC AAGTCCTGCA
  GGCCAGTTTT CCTTAACATC TCTTCAGCAG CCTCCTCCTC TCCACCCTCC ATCATTCTCC
  Y
  TGTTCAGATA TTTCCCCTCT GTCTTTGTTA CCCTATCATA ACCTCCTGAT GGGCAGCTGC
  TCTCAGGCCT CCCTGTGTAA CAGAATGTTT TCCCATCTGT TGTTCACTGC AGTTCTCTGT
  GGAAGGGAAG CCCATTGTGT TCTGTAGGAC CCAGGTCCTT CTCTGGTGTG GCTCAGCCTT
  CCACAGGCCC AGTGCTGGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SM/J	SPRET/EiJ
ss12751740	Gsta1_4_JC5985_4	ROCHEBIO	RPAMM	f	SNP	T	T		T			T	T	T	C
ss12753723	Gsta1_4_JC6043_3	ROCHEBIO	RPAMM	f	SNP	T	T		T		T	T	T		C			T	T			C
ss24752701	Gsta1_JC6043_3	ROCHEBIO	RPAMM	f	SNP	T	T	T	T		T	T	T	T	C	T	T	T	T	T	T	C
ss24753658	Gsta1_JC5985_5	ROCHEBIO	RPAMM	r	SNP	A	A	A	A	A		A	A	A	G	A	A			A	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SM/J	SPRET/EiJ
rs8255643					SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:78240628 () rs orientation: forward

Symbol	Name	Function Class
Gm70238	predicted gene, 70238	within coordinates
Gsta2	glutathione S-transferase, alpha 2 (Yc2)	within coordinates
Tssr2946	transcription start site region 2946	39 bp downstream