rs8255645 SNP Detail

Summary

• ID
  rs8255645
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:78240669 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTCT GTCTTTGTTA CCCTATCATA
  W
  CCTCCTGATG GGCAGCTGCT CTCAG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	LP/J	MOLF/EiJ	NOD/ShiLtJ	NZW/Lac	NZW/LacJ	PWD/PhJ	SM/J
ss12751742	Gsta1_4_JC5985_6	ROCHEBIO	RPAMM	f	SNP	A		T		T		T		T	A	A
ss24753655	Gsta1_JC5985_2	ROCHEBIO	RPAMM	r	SNP	T		A	A	A	T	A		A	T	T	A		A	T			T			T
ss46327729	mCV24232339	ABI	CRAMUS_MOUSE	f	SNP		A		T
ss61427542	NES16812014	PERLEGEN	MM_PANEL2	f	SNP		A		T	T			A			A		T			A	T		A	A
ss136666896	ENSMUSSNP4519456	ENSEMBL	ENSEMBL_Sanger	f	SNP				T
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	LP/J	MOLF/EiJ	NOD/ShiLtJ	NZW/Lac	NZW/LacJ	PWD/PhJ	SM/J
rs8255645					SNP	A	A	T	T	T	A	T	A	T	A	A	T	T	T	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61427542	NES16812014	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:78240669 () rs orientation: forward

Symbol	Name	Function Class
Gm70238	predicted gene, 70238	within coordinates
Gsta2	glutathione S-transferase, alpha 2 (Yc2)	within coordinates
Tssr2946	transcription start site region 2946	80 bp downstream