rs8255655 SNP Detail

Summary

• ID
  rs8255655
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:78240210 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAAACCAA GACAGGAGTC
  CTGTGACCTC AGTTCCTTCC AAACATGGAA GTAATTTTGG ATTAAGCTTC TCTGCCCATC
  CCAGCTGTAG TGAATGGGAG TGAGTTCAGC TCAGATTTTT CATTACAACT GGCTATTGTT
  ATGTATTTAT ATGTCTATAT GGAAAAACAT GTTTTTGTCA CTTGCAACTT GGCCAGCACA
  W
  GCAGTTTGCT CTTGTGAGTG TACATGTTGC TCATGGGACT CATCAGTTTG ATGCTCTGAA
  TAAAGTTGTC TATTGCATGA GACTTTAGTT CACCTCCTTC ATGGACGCCA TTCTCCCAGG
  TCCCACCTCC TCTAGAGCAG AAAACCAGGA CCCTAACAAA TTTGTAAGAA GCCCTCGTCC
  TCTAGGACCA TAATTTTAGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	LP/J	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZW/Lac	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss12751752	Gsta1_4_JC5989_2	ROCHEBIO	RPAMM	f	SNP	T		T				T	T		T	T	A							T
ss24753662	Gsta1_JC5989_1	ROCHEBIO	RPAMM	f	SNP	T		T	T		T	T	T		T	T	A	T			T	T		T		T			T
ss61427551	NES16812005	PERLEGEN	MM_PANEL2	f	SNP		T		T	T		T		T	T		A	T	T	T			T		T		T	T		T
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	LP/J	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZW/Lac	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs8255655					SNP	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61427551	NES16812005	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:78240210 () rs orientation: forward

Symbol	Name	Function Class
Gm70238	predicted gene, 70238	within coordinates
Gsta2	glutathione S-transferase, alpha 2 (Yc2)	Intron
Tssr2946	transcription start site region 2946	377 bp upstream