rs8255656 SNP Detail

Summary

• ID
  rs8255656
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:78240236 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCAGTTCC TTCCAAACAT
  GGAAGTAATT TTGGATTAAG CTTCTCTGCC CATCCCAGCT GTAGTGAATG GGAGTGAGTT
  CAGCTCAGAT TTTTCATTAC AACTGGCTAT TGTTATGTAT TTATATGTCT ATATGGAAAA
  ACATGTTTTT GTCACTTGCA ACTTGGCCAG CACATGCAGT TTGCTCTTGT GAGTGTACAT
  K
  TTGCTCATGG GACTCATCAG TTTGATGCTC TGAATAAAGT TGTCTATTGC ATGAGACTTT
  AGTTCACCTC CTTCATGGAC GCCATTCTCC CAGGTCCCAC CTCCTCTAGA GCAGAAAACC
  AGGACCCTAA CAAATTTGTA AGAAGCCCTC GTCCTCTAGG ACCATAATTT TAGCTCTTAT
  CTTTTACTTG GCAGAAGTTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	LP/J	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZW/Lac	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss12751753	Gsta1_4_JC5989_3	ROCHEBIO	RPAMM	f	SNP	G		G		G		G	G		G	G	T							G
ss24753664	Gsta1_JC5989_3	ROCHEBIO	RPAMM	f	SNP	G		G	G	G	G	G	G		G	G	T	G			G	G		G		T			G
ss61427549	NES16812007	PERLEGEN	MM_PANEL2	f	SNP		G		G	G		G		G	G		T	G	G	G			T		G		T	T		G
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	LP/J	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZW/Lac	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs8255656					SNP	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	T	G	G	T	T	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61427549	NES16812007	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:78240236 () rs orientation: forward

Symbol	Name	Function Class
Gm70238	predicted gene, 70238	within coordinates
Gsta2	glutathione S-transferase, alpha 2 (Yc2)	within coordinates
Tssr2946	transcription start site region 2946	351 bp upstream