rs8255726 SNP Detail

Summary

• ID
  rs8255726
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:60938477 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                  NNNNAG GAGNTGGGCA
  TTTTTGTTAT CTCCCTCTGC CTGTGCCttt ttttttaagg ctngttttac tatgtagttg
  R
  nctggaattc acnnngnaga ccaagctnnn nggccttgag ctaagagaaa cttancttct
  cctgagtgtt gggattaaan gngtgtncca ctatggctgg cATTATTATT ACACAGNAGG
  AATTTGAGCT CATCTAGTAA NTAACTTCCA GGTTATCTCA GCTGCTGAGT GTTGGGCATA
  GCATTTGAGN CAGGACCAGT CTGAGTCCTG TCTGGGTCCT GTAGAGGCCT CATTTGTGNA
  GCGAGGAGGT AGGAGCCCTC TGACCTCAGG CCTCTCATTG AGGGCTGTGT ATTCAA    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	DBA/2J	MRL/MpJ	SPRET/EiJ
ss12751823	X13414_JC649_2	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	DBA/2J	MRL/MpJ	SPRET/EiJ
rs8255726					SNP	G	G	G	G	G	G	G	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:60938477 () rs orientation: forward

Symbol	Name	Function Class
Cd74	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	within coordinates
D18Mit77	DNA segment, Chr 18, Massachusetts Institute of Technology 77	1164 bp distal
Rr405669	regulatory region 405669	1557 bp downstream
Rr405670	regulatory region 405670	246 bp downstream
Rr405671	regulatory region 405671	251 bp upstream
Rr405672	regulatory region 405672	1107 bp upstream
Rr538682	regulatory region 538682	1547 bp distal
Tssr151326	transcription start site region 151326	1549 bp downstream
Tssr151327	transcription start site region 151327	1537 bp downstream
Tssr151328	transcription start site region 151328	388 bp downstream
Tssr151329	transcription start site region 151329	317 bp downstream
Tssr151330	transcription start site region 151330	537 bp upstream
Tssr151331	transcription start site region 151331	573 bp upstream
Tssr151332	transcription start site region 151332	1592 bp upstream
Tssr153492	transcription start site region 153492	1391 bp upstream