rs8255728 SNP Detail

Summary

• ID
  rs8255728
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:60938490 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    NNNNAGGAG NTGGGCATTT TTGTTATCTC
  CCTCTGCCTG TGCCtttttt tttaaggctn gttttactat gtagttgnnc tggaattcac
  R
  nngnagacca agctnnnngg ccttgagcta agagaaactt ancttctcct gagtgttggg
  attaaangng tgtnccacta tggctggcAT TATTATTACA CAGNAGGAAT TTGAGCTCAT
  CTAGTAANTA ACTTCCAGGT TATCTCAGCT GCTGAGTGTT GGGCATAGCA TTTGAGNCAG
  GACCAGTCTG AGTCCTGTCT GGGTCCTGTA GAGGCCTCAT TTGTGNAGCG AGGAGGTAGG
  AGCCCTCTGA CCTCAGGCCT CTCATTGAGG GCTGTGTATT CAA                  
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	DBA/2J	MRL/MpJ	SPRET/EiJ
ss12751825	X13414_JC649_4	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	DBA/2J	MRL/MpJ	SPRET/EiJ
rs8255728					SNP	G	G	G	G	G	G	G	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:60938490 () rs orientation: forward

Symbol	Name	Function Class
Cd74	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	within coordinates
D18Mit77	DNA segment, Chr 18, Massachusetts Institute of Technology 77	1177 bp distal
Rr405669	regulatory region 405669	1570 bp downstream
Rr405670	regulatory region 405670	259 bp downstream
Rr405671	regulatory region 405671	238 bp upstream
Rr405672	regulatory region 405672	1094 bp upstream
Tssr151326	transcription start site region 151326	1562 bp downstream
Tssr151327	transcription start site region 151327	1550 bp downstream
Tssr151328	transcription start site region 151328	401 bp downstream
Tssr151329	transcription start site region 151329	330 bp downstream
Tssr151330	transcription start site region 151330	524 bp upstream
Tssr151331	transcription start site region 151331	560 bp upstream
Tssr151332	transcription start site region 151332	1579 bp upstream
Tssr153492	transcription start site region 153492	1404 bp upstream