rs8255737 SNP Detail

Summary

• ID
  rs8255737
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:60938557 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATAAACAAA CTACAGATTC
  TATCTTAATT CCTACAGTTA CTGTAGCTAG GAGTTGGGCA TTTTTGTTAT CTCCCTCTGC
  CTGTGCCTTT TTTTTTAAGG CTAGTTTTAC TATGTAGTTG GGCTGGAATT CACGGAGTAG
  ACCAAGCTAC TTGGCCTTGA GCTAAGAGAA ACTTAACTTC TCCTGAGTGT TGGGATTAAA
  R
  GTGTGTGCCA CTATGGCTGG CATTATTATT ACACAGAAGG AATTTGAGCT CATCTAGTAA
  TTAACTTCCA GGTTATCTCA GCTGCTGAGT GTTGGGCATA GCATTTGAGT CAGGACCAGT
  CTGAGTCCTG TCTGGGTCCT GTAGAGGCCT CATTTGTGGA GCGAGGAGGT AGGAGCCCTC
  TGACCTCAGG CCTCTCATTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	SPRET/EiJ
ss12751834	X13414_JC649_13	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	SPRET/EiJ
rs8255737					SNP	A	A	A	A	A	A	A	A	A	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:60938557 () rs orientation: forward

Symbol	Name	Function Class
Cd74	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	within coordinates
D18Mit77	DNA segment, Chr 18, Massachusetts Institute of Technology 77	1244 bp distal
Rr405669	regulatory region 405669	1637 bp downstream
Rr405670	regulatory region 405670	326 bp downstream
Rr405671	regulatory region 405671	171 bp upstream
Rr405672	regulatory region 405672	1027 bp upstream
Rr538682	regulatory region 538682	1627 bp distal
Tssr151326	transcription start site region 151326	1629 bp downstream
Tssr151327	transcription start site region 151327	1617 bp downstream
Tssr151328	transcription start site region 151328	468 bp downstream
Tssr151329	transcription start site region 151329	397 bp downstream
Tssr151330	transcription start site region 151330	457 bp upstream
Tssr151331	transcription start site region 151331	493 bp upstream
Tssr151332	transcription start site region 151332	1512 bp upstream
Tssr153492	transcription start site region 153492	1471 bp upstream