rs8255738 SNP Detail

Summary

• ID
  rs8255738
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:60938559 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAACAAACT ACAGATTCTA
  TCTTAATTCC TACAGTTACT GTAGCTAGGA GTTGGGCATT TTTGTTATCT CCCTCTGCCT
  GTGCCTTTTT TTTTAAGGCT AGTTTTACTA TGTAGTTGGG CTGGAATTCA CGGAGTAGAC
  CAAGCTACTT GGCCTTGAGC TAAGAGAAAC TTAACTTCTC CTGAGTGTTG GGATTAAAAG
  K
  GTGTGCCACT ATGGCTGGCA TTATTATTAC ACAGAAGGAA TTTGAGCTCA TCTAGTAATT
  AACTTCCAGG TTATCTCAGC TGCTGAGTGT TGGGCATAGC ATTTGAGTCA GGACCAGTCT
  GAGTCCTGTC TGGGTCCTGT AGAGGCCTCA TTTGTGGAGC GAGGAGGTAG GAGCCCTCTG
  ACCTCAGGCC TCTCATTGAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	SPRET/EiJ
ss12751835	X13414_JC649_14	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	SPRET/EiJ
rs8255738					SNP	T	T	T	T	T	T	T	T	T	T	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:60938559 () rs orientation: forward

Symbol	Name	Function Class
Cd74	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	within coordinates
D18Mit77	DNA segment, Chr 18, Massachusetts Institute of Technology 77	1246 bp distal
Rr405669	regulatory region 405669	1639 bp downstream
Rr405670	regulatory region 405670	328 bp downstream
Rr405671	regulatory region 405671	169 bp upstream
Rr405672	regulatory region 405672	1025 bp upstream
Tssr151326	transcription start site region 151326	1631 bp downstream
Tssr151327	transcription start site region 151327	1619 bp downstream
Tssr151328	transcription start site region 151328	470 bp downstream
Tssr151329	transcription start site region 151329	399 bp downstream
Tssr151330	transcription start site region 151330	455 bp upstream
Tssr151331	transcription start site region 151331	491 bp upstream
Tssr151332	transcription start site region 151332	1510 bp upstream
Tssr153492	transcription start site region 153492	1473 bp upstream