rs8255741 SNP Detail

Summary

• ID
  rs8255741
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:60938618 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAGG AATTTGAGCT CATCTAGTAA
  K
  TAACTTCCAG GTTATCTCAG CTGCT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	SPRET/EiJ	WSB/EiJ
ss12751838	X13414_JC649_17	ROCHEBIO	RPAMM	f	SNP	T		G	G	T	T	G	G		T	T	G	T				T					G
ss50416932	NES13460487	PERLEGEN	MM_PANEL2	f	SNP		T		G	T		G		T	T			T	G		G		G	T	T			T
ss147250001	ENSMUSSNP4671694	ENSEMBL	ENSEMBL_Sanger	f	SNP				G
ss325640655	CHEV_18_60965200	CHEVERUD	SCREENING_POP	f	SNP															T						G
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	SPRET/EiJ	WSB/EiJ
rs8255741					SNP	T	T	G	G	T	T	G	G	T	T	T	G	T	G	T	G	T	G	T	T	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50416932	NES13460487	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:60938618 () rs orientation: forward

Symbol	Name	Function Class
Cd74	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	within coordinates
D18Mit77	DNA segment, Chr 18, Massachusetts Institute of Technology 77	1305 bp distal
Rr405669	regulatory region 405669	1698 bp downstream
Rr405670	regulatory region 405670	387 bp downstream
Rr405671	regulatory region 405671	110 bp upstream
Rr405672	regulatory region 405672	966 bp upstream
Tssr151326	transcription start site region 151326	1690 bp downstream
Tssr151327	transcription start site region 151327	1678 bp downstream
Tssr151328	transcription start site region 151328	529 bp downstream
Tssr151329	transcription start site region 151329	458 bp downstream
Tssr151330	transcription start site region 151330	396 bp upstream
Tssr151331	transcription start site region 151331	432 bp upstream
Tssr151332	transcription start site region 151332	1451 bp upstream
Tssr151333	transcription start site region 151333	1989 bp upstream
Tssr153492	transcription start site region 153492	1532 bp upstream