rs8255742 SNP Detail

Summary

• ID
  rs8255742
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:60938667 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGTAGTTG GGCTGGAATT
  CACGGAGTAG ACCAAGCTAC TTGGCCTTGA GCTAAGAGAA ACTTAACTTC TCCTGAGTGT
  TGGGATTAAA AGTGTGTGCC ACTATGGCTG GCATTATTAT TACACAGAAG GAATTTGAGC
  TCATCTAGTA ATTAACTTCC AGGTTATCTC AGCTGCTGAG TGTTGGGCAT AGCATTTGAG
  Y
  CAGGACCAGT CTGAGTCCTG TCTGGGTCCT GTAGAGGCCT CATTTGTGGA GCGAGGAGGT
  AGGAGCCCTC TGACCTCAGG CCTCTCATTG AGGGCTGTGT ATTCAACAAA TCCATGACAA
  TCTTCACTTT ACTTCAGTTA CTGCTTCCAA GACTGACCAG GCCTTAAGGT CCAGGGCCAT
  TCCCTACAGG TTTGATTTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZW/LacJ	SPRET/EiJ	WSB/EiJ
ss12751839	X13414_JC649_18	ROCHEBIO	RPAMM	f	SNP	T		T	T	T	T	T	T		T	T	C	T			T			C
ss50416930	NES13460488	PERLEGEN	MM_PANEL2	f	SNP		T		T	T		T		T	T			T	C	C		C	T		T
ss147250007	ENSMUSSNP680842	ENSEMBL	ENSEMBL_Sanger	f	SNP				T									T
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZW/LacJ	SPRET/EiJ	WSB/EiJ
rs8255742					SNP	T	T	T	T	T	T	T	T	T	T	T	C	T	C	C	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50416930	NES13460488	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:60938667 () rs orientation: forward

Symbol	Name	Function Class
Cd74	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	within coordinates
D18Mit77	DNA segment, Chr 18, Massachusetts Institute of Technology 77	1354 bp distal
Rr405669	regulatory region 405669	1747 bp downstream
Rr405670	regulatory region 405670	436 bp downstream
Rr405671	regulatory region 405671	61 bp upstream
Rr405672	regulatory region 405672	917 bp upstream
Rr538682	regulatory region 538682	1737 bp distal
Tssr151326	transcription start site region 151326	1739 bp downstream
Tssr151327	transcription start site region 151327	1727 bp downstream
Tssr151328	transcription start site region 151328	578 bp downstream
Tssr151329	transcription start site region 151329	507 bp downstream
Tssr151330	transcription start site region 151330	347 bp upstream
Tssr151331	transcription start site region 151331	383 bp upstream
Tssr151332	transcription start site region 151332	1402 bp upstream
Tssr151333	transcription start site region 151333	1940 bp upstream
Tssr153492	transcription start site region 153492	1581 bp upstream