rs8255744 SNP Detail

Summary

• ID
  rs8255744
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:60939692 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GAGAA AGGAGATCAG ACAGGAGGGA
  R
  AATAGGTTTA AATTTCTTGG CCTTC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	CAST/EiJ	DBA/2J	NZB/BlNJ	SPRET/EiJ
ss12751841	X13414_JC652_1	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	CAST/EiJ	DBA/2J	NZB/BlNJ	SPRET/EiJ
rs8255744					SNP	G	G	G	G	G	G	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:60939692 () rs orientation: reverse

Symbol	Name	Function Class
Cd74	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	within coordinates
Rr405670	regulatory region 405670	1461 bp downstream
Rr405671	regulatory region 405671	663 bp downstream
Rr405672	regulatory region 405672	within coordinates
Tssr5344	transcription start site region 5344	1051 bp upstream
Tssr151328	transcription start site region 151328	1603 bp downstream
Tssr151329	transcription start site region 151329	1532 bp downstream
Tssr151330	transcription start site region 151330	652 bp downstream
Tssr151331	transcription start site region 151331	633 bp downstream
Tssr151332	transcription start site region 151332	377 bp upstream
Tssr151333	transcription start site region 151333	915 bp upstream
Tssr151334	transcription start site region 151334	1279 bp upstream
Tssr151335	transcription start site region 151335	1288 bp upstream
Tssr151336	transcription start site region 151336	1322 bp upstream
Tssr151337	transcription start site region 151337	1376 bp upstream
Tssr151338	transcription start site region 151338	1432 bp upstream
Tssr151339	transcription start site region 151339	1611 bp upstream
Tssr153493	transcription start site region 153493	1435 bp downstream
Tssr153494	transcription start site region 153494	1457 bp downstream
Tssr153495	transcription start site region 153495	1673 bp downstream