rs8255746 SNP Detail

Summary

• ID
  rs8255746
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:60939682 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

   ATTTATTTC CTAAGCCAAG GGCTGGAGAA AGGAGATCAG ACAGGAGGGA NAATANGTTT
  M
  ANTTTCTTGG CCTTCTGAAG GAAGATGGAA CCTGGGCTCA NGGTCTTCTG CTTCATCTAC
  TTTGGTGACT CATGGAACCC CNGAACCCCT CTACCACCCC ATATTCAGAT CTAGTNCCAG
  CTCTACCTGC TACCACATGA GCTTGGGGTA GCCACGTCCC TCTCCTNTCG AACTTCAANC
  TTTCAGAAGN CCAGTGAACA CAGGTTTGTA TTGAAGATGN GAACAGTAGC CATAACTGGC
  ATCCTGGCTT GCCTAACTCT GGGGCCAGGA ACAAGACNNN NCTTCTGCGT GTGGACCAGG
  TTAGGGCTTG GAATGAGCGG TT                                         
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	CAST/EiJ	DBA/2J	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12751843	X13414_JC652_3	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	CAST/EiJ	DBA/2J	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8255746					SNP	A	A	A	A	A	A	A	A	A	A	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:60939682 () rs orientation: reverse

Symbol	Name	Function Class
Cd74	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	within coordinates
Rr405670	regulatory region 405670	1451 bp downstream
Rr405671	regulatory region 405671	653 bp downstream
Rr405672	regulatory region 405672	within coordinates
Tssr5344	transcription start site region 5344	1061 bp upstream
Tssr151328	transcription start site region 151328	1593 bp downstream
Tssr151329	transcription start site region 151329	1522 bp downstream
Tssr151330	transcription start site region 151330	642 bp downstream
Tssr151331	transcription start site region 151331	623 bp downstream
Tssr151332	transcription start site region 151332	387 bp upstream
Tssr151333	transcription start site region 151333	925 bp upstream
Tssr151334	transcription start site region 151334	1289 bp upstream
Tssr151335	transcription start site region 151335	1298 bp upstream
Tssr151336	transcription start site region 151336	1332 bp upstream
Tssr151337	transcription start site region 151337	1386 bp upstream
Tssr151338	transcription start site region 151338	1442 bp upstream
Tssr151339	transcription start site region 151339	1621 bp upstream
Tssr153493	transcription start site region 153493	1445 bp downstream
Tssr153494	transcription start site region 153494	1467 bp downstream
Tssr153495	transcription start site region 153495	1683 bp downstream