rs8255752 SNP Detail

Summary

• ID
  rs8255752
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:60939462 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              GGAAGATGGA ACCTGGGCTC
  AAGGTCTTCT GCTTCATCTA CTTTGGTGAC TCATGGAACC CCCGAACCCC TCTACCACCC
  CATATTCAGA TCTAGTCCCA GCTCTACCTG CTACCACATG AGCTTGGGGT AGCCACGTCC
  CTCTCCTTTC GAACTTCAAC CTTTCAGAAG GCCAGTGAAC ACAGGTTTGT ATTGAAGATG
  W
  GAACAGTAGC CATAACTGGC ATCCTGGCTT GCCTAACTCT GGGGCCAGGA ACAAGACACT
  TCTGCGTGTG GACCAGGTTA GGGCTTGGAA TGAGCGGTTG TTAAATAACG AAGAGATGAA
  ACATAAATAA CGAAGAGATG AAACACTTGG CCCCACACCG GACACACATT TCCTCTACCA
  GTAATACTGC TCTCAGGAAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	CAST/EiJ	DBA/2J	NZB/BlNJ	SPRET/EiJ
ss12751851	X13414_JC652_11	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	T	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	CAST/EiJ	DBA/2J	NZB/BlNJ	SPRET/EiJ
rs8255752					SNP	T	T	T	T	T	T	T	T	T	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:60939462 () rs orientation: reverse

Symbol	Name	Function Class
Cd74	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	within coordinates
Rr405670	regulatory region 405670	1231 bp downstream
Rr405671	regulatory region 405671	433 bp downstream
Rr405672	regulatory region 405672	122 bp upstream
Tssr5344	transcription start site region 5344	1281 bp upstream
Tssr151328	transcription start site region 151328	1373 bp downstream
Tssr151329	transcription start site region 151329	1302 bp downstream
Tssr151330	transcription start site region 151330	422 bp downstream
Tssr151331	transcription start site region 151331	403 bp downstream
Tssr151332	transcription start site region 151332	607 bp upstream
Tssr151333	transcription start site region 151333	1145 bp upstream
Tssr151334	transcription start site region 151334	1509 bp upstream
Tssr151335	transcription start site region 151335	1518 bp upstream
Tssr151336	transcription start site region 151336	1552 bp upstream
Tssr151337	transcription start site region 151337	1606 bp upstream
Tssr151338	transcription start site region 151338	1662 bp upstream
Tssr151339	transcription start site region 151339	1841 bp upstream
Tssr153493	transcription start site region 153493	1665 bp downstream
Tssr153494	transcription start site region 153494	1687 bp downstream
Tssr153495	transcription start site region 153495	1903 bp downstream