rs8256115 SNP Detail

Summary

• ID
  rs8256115
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:60938824 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCAGGTTAT CTCAGCTGCT
  GAGTGTTGGG CATAGCATTT GAGTCAGGAC CAGTCTGAGT CCTGTCTGGG TCCTGTAGAG
  GCCTCATTTG TGGAGCGAGG AGGTAGGAGC CCTCTGACCT CAGGCCTCTC ATTGAGGGCT
  GTGTATTCAA CAAATCCATG ACAATCTTCA CTTTACTTCA GTTACTGCTT CCAAGACTGA
  Y
  CAGGCCTTAA GGTCCAGGGC CATTCCCTAC AGGTTTGATT TGGGGCATTT TTGTGAACAC
  TTCTGCCTGG CAACATGTGC GTCATGATTC CTGACGGCTC TGGTTGGTTT CTGACTTAAG
  TCAATTTTTT TTTTTTTAAA CACAAGGAGG AAGTACAAAG GAGGAAGTAA AACCAGGAGG
  TGGCAAGAGT TGGCACTCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	BALB/cJ	C3H/HeJ	MRL/MpJ	SPRET/EiJ
ss12752276	X13414_JC650_2	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	BALB/cJ	C3H/HeJ	MRL/MpJ	SPRET/EiJ
rs8256115					SNP	C	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:60938824 () rs orientation: forward

Symbol	Name	Function Class
Cd74	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	Intron
D18Mit77	DNA segment, Chr 18, Massachusetts Institute of Technology 77	1511 bp distal
Rr405669	regulatory region 405669	1904 bp downstream
Rr405670	regulatory region 405670	593 bp downstream
Rr405671	regulatory region 405671	within coordinates
Rr405672	regulatory region 405672	760 bp upstream
Rr538682	regulatory region 538682	1894 bp distal
Tssr5344	transcription start site region 5344	1919 bp upstream
Tssr151326	transcription start site region 151326	1896 bp downstream
Tssr151327	transcription start site region 151327	1884 bp downstream
Tssr151328	transcription start site region 151328	735 bp downstream
Tssr151329	transcription start site region 151329	664 bp downstream
Tssr151330	transcription start site region 151330	190 bp upstream
Tssr151331	transcription start site region 151331	226 bp upstream
Tssr151332	transcription start site region 151332	1245 bp upstream
Tssr151333	transcription start site region 151333	1783 bp upstream
Tssr153492	transcription start site region 153492	1738 bp upstream