rs8256118 SNP Detail

Summary

• ID
  rs8256118
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:60939016 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTAAA ACCAGGAGGT GGCAAGAGTT
  R
  GCACTCAATC AGAACCAAGA CCCAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	SPRET/EiJ	WSB/EiJ
ss12752279	X13414_JC650_5	ROCHEBIO	RPAMM	f	SNP	G			A	G		A		G						G					G
ss50416920	NES13460493	PERLEGEN	MM_PANEL2	f	SNP		G		A	G	A		G	G	G	G	G		G		G	G	G			G
ss147250036	ENSMUSSNP636126	ENSEMBL	ENSEMBL_Sanger	f	SNP			G	A						G
ss325640660	CHEV_18_60965598	CHEVERUD	SCREENING_POP	f	SNP													G						A
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	SPRET/EiJ	WSB/EiJ
rs8256118					SNP	G	G	G	A	G	A	A	G	G	G	G	G	G	G	G	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50416920	NES13460493	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:60939016 () rs orientation: forward

Symbol	Name	Function Class
Cd74	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	within coordinates
D18Mit77	DNA segment, Chr 18, Massachusetts Institute of Technology 77	1703 bp distal
Rr405670	regulatory region 405670	785 bp downstream
Rr405671	regulatory region 405671	within coordinates
Rr405672	regulatory region 405672	568 bp upstream
Tssr5344	transcription start site region 5344	1727 bp upstream
Tssr151328	transcription start site region 151328	927 bp downstream
Tssr151329	transcription start site region 151329	856 bp downstream
Tssr151330	transcription start site region 151330	within coordinates
Tssr151331	transcription start site region 151331	34 bp upstream
Tssr151332	transcription start site region 151332	1053 bp upstream
Tssr151333	transcription start site region 151333	1591 bp upstream
Tssr151334	transcription start site region 151334	1955 bp upstream
Tssr151335	transcription start site region 151335	1964 bp upstream
Tssr151336	transcription start site region 151336	1998 bp upstream
Tssr153492	transcription start site region 153492	1930 bp upstream