rs8256194 SNP Detail

Summary

• ID
  rs8256194
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:128517243 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTGA CTGTTGGTGG CGTGGACAAT
  R
  GCGAGGTACC GGTCCAGGCT GATGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C57BL/6J	DBA/2J	LG/J	NZB/BlNJ	NZW/Lac	SM/J	SPRET/EiJ
ss12752357	X99581_JC836_4	ROCHEBIO	RPAMM	f	SNP	G	A	G	A	G		G	G		G
ss45151113	mCV23203429	ABI	CRAMUS_MOUSE	f	SNP	G			A	G
ss145462229	ENSMUSSNP3323206	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss319965163	CHEV_1_130486083	CHEVERUD	SCREENING_POP	f	SNP						G			G
SNP Consensus Information
SNP					Consensus Type	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C57BL/6J	DBA/2J	LG/J	NZB/BlNJ	NZW/Lac	SM/J	SPRET/EiJ
rs8256194					SNP	G	A	G	A	G	G	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:128517243 () rs orientation: forward

Symbol	Name	Function Class
Cpgi697	CpG island 697	1278 bp proximal
Cxcr4	C-X-C motif chemokine receptor 4	within coordinates
Rr12058	regulatory region 12058	1643 bp distal
Rr28453	regulatory region 28453	within coordinates
Rr366855	regulatory region 366855	1577 bp upstream
Tssr8536	transcription start site region 8536	1448 bp upstream
Tssr8537	transcription start site region 8537	1771 bp upstream
Tssr8538	transcription start site region 8538	1799 bp upstream
Tssr8539	transcription start site region 8539	1813 bp upstream
Tssr13461	transcription start site region 13461	1044 bp upstream
Tssr13462	transcription start site region 13462	874 bp upstream
Tssr13463	transcription start site region 13463	774 bp upstream
Tssr13464	transcription start site region 13464	732 bp upstream
Tssr13465	transcription start site region 13465	719 bp upstream
Tssr13466	transcription start site region 13466	648 bp upstream
Tssr13467	transcription start site region 13467	606 bp upstream
Tssr13468	transcription start site region 13468	520 bp upstream
Tssr13469	transcription start site region 13469	466 bp upstream
Tssr13470	transcription start site region 13470	376 bp upstream
Tssr13471	transcription start site region 13471	304 bp upstream
Tssr13472	transcription start site region 13472	236 bp upstream
Tssr13473	transcription start site region 13473	221 bp upstream
Tssr13474	transcription start site region 13474	160 bp upstream
Tssr13475	transcription start site region 13475	139 bp upstream
Tssr13476	transcription start site region 13476	127 bp upstream
Tssr13477	transcription start site region 13477	61 bp upstream
Tssr13478	transcription start site region 13478	1310 bp downstream
Tssr13479	transcription start site region 13479	1339 bp downstream
Tssr13480	transcription start site region 13480	1661 bp downstream