rs8256199 SNP Detail

Summary

• ID
  rs8256199
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:40154431 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              ATTCTGAGCA TCCGCGGACA
  GGGGAGACCC TGCAACCGGT CCCCCCCGAA AGCCAGGCCT CTCAAAGCTC CCCACGGGAA
  AGCAATGAGT CTCTCGAGAA ACTTTCCAAG GCCAGCCGCG ACCGCTCAGC ACCAGCCCTA
  CGCACAGGCG CACAGGCGTA CTAGTGCGCG GGGTGGGCGC TCACCCGACG AAGAAGGGGG
  S
  TCTTGCCCCT CCTTCTCTCC TCGACCCCCC TCTCACGGGC TTCTCAGACA CAAACGGGAA
  GGCACACAGC CAGACGGAGC ACCGGAGGCA CACCAGGGAA TGGGAAGCGC CACCACCAGC
  TCAGAAGCAG GCACCTAGGA GACAAACCTG GAACGCTCCA GGAGCACCTC GACGCTTACA
  AGAAACAGCG CGTGCACACA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	B10.D2-Hc<0> H2 H2-T18/oSnJ	C57BL/6J	CAST/EiJ
ss12752362	NM_017474_JC841_1	ROCHEBIO	RPAMM	f	SNP	C	G	G	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	B10.D2-Hc<0> H2 H2-T18/oSnJ	C57BL/6J	CAST/EiJ
rs8256199					SNP	C	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:40154431 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi9159	CpG island 9159	within coordinates
Gm26917	predicted gene, 26917	within coordinates
Rn18s	18S ribosomal RNA	1631 bp proximal
Tssr148051	transcription start site region 148051	211 bp upstream
Tssr148052	transcription start site region 148052	within coordinates
Tssr148053	transcription start site region 148053	88 bp downstream
Tssr148054	transcription start site region 148054	591 bp downstream
Tssr148055	transcription start site region 148055	835 bp downstream
Tssr148056	transcription start site region 148056	1177 bp downstream
Tssr148057	transcription start site region 148057	1582 bp downstream