rs8256203 SNP Detail

Summary

• ID
  rs8256203
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:40154394 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                 ATCAAC AACCAGCCCT ACGCACAGGC GTACTAGTGC GCGGGGTGGG
  CGCTCACCCG ACGAAGAAGG GGGNTCTTGC CCCTCCTNNN NTCCTCGACC CCCCTCTCAC
  R
  GGCTTCTCNG ACACAAACGG GAAGGCACAC AGCCAGACGG AGCACCNGAG GCACACCAGG
  GAATGGGAAG CGCCACCACC AGCTCAGAAG CAGGCACCTA GGAGACAAAC CTGGAACGCT
  CCAGGAGCAC CTCGANGCTT ACAAGAAACA GCGCGTGCAC ACACCAAAAC GAGAAG    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	B10.D2-Hc<0> H2 H2-T18/oSnJ	C57BL/6J	CAST/EiJ
ss12752366	NM_017474_JC841_5	ROCHEBIO	RPAMM	f	SNP	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	B10.D2-Hc<0> H2 H2-T18/oSnJ	C57BL/6J	CAST/EiJ
rs8256203					SNP	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:40154394 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi9159	CpG island 9159	within coordinates
Gm26917	predicted gene, 26917	within coordinates
Rn18s	18S ribosomal RNA	1668 bp proximal
Tssr148051	transcription start site region 148051	174 bp upstream
Tssr148052	transcription start site region 148052	within coordinates
Tssr148053	transcription start site region 148053	125 bp downstream
Tssr148054	transcription start site region 148054	628 bp downstream
Tssr148055	transcription start site region 148055	872 bp downstream
Tssr148056	transcription start site region 148056	1214 bp downstream
Tssr148057	transcription start site region 148057	1619 bp downstream