rs8256204 SNP Detail

Summary

• ID
  rs8256204
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:40154385 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              CGAAAGCCAG GCCTCTCAAA
  GCTCCCCACG GGAAAGCAAT GAGTCTCTCG AGAAACTTTC CAAGGCCAGC CGCGACCGCT
  CAGCACCAGC CCTACGCACA GGCGCACAGG CGTACTAGTG CGCGGGGTGG GCGCTCACCC
  GACGAAGAAG GGGGGTCTTG CCCCTCCTTC TCTCCTCGAC CCCCCTCTCA CGGGCTTCTC
  R
  GACACAAACG GGAAGGCACA CAGCCAGACG GAGCACCGGA GGCACACCAG GGAATGGGAA
  GCGCCACCAC CAGCTCAGAA GCAGGCACCT AGGAGACAAA CCTGGAACGC TCCAGGAGCA
  CCTCGACGCT TACAAGAAAC AGCGCGTGCA CACACCAGAC GGGAAGGGTA TGCAACGCCA
  CCGGCCACAT CCACCGACTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss12752367	NM_017474_JC841_6	ROCHEBIO	RPAMM	f	SNP	A			A				A	G
ss62722076	NES17331403	PERLEGEN	MM_PANEL2	r	SNP		T	T	T	T	T	T		C	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs8256204					SNP	A	A	A	A	A	A	A	A	G	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62722076	NES17331403	PERLEGEN	MM_PANEL	r	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:40154385 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi9159	CpG island 9159	within coordinates
Gm26917	predicted gene, 26917	within coordinates
Rn18s	18S ribosomal RNA	1677 bp proximal
Tssr148051	transcription start site region 148051	165 bp upstream
Tssr148052	transcription start site region 148052	within coordinates
Tssr148053	transcription start site region 148053	134 bp downstream
Tssr148054	transcription start site region 148054	637 bp downstream
Tssr148055	transcription start site region 148055	881 bp downstream
Tssr148056	transcription start site region 148056	1223 bp downstream
Tssr148057	transcription start site region 148057	1628 bp downstream