rs8256977 SNP Detail

Summary

• ID
  rs8256977
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:14915135 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              CCAGATAAAT GTCCAGAAAG
  CTTTGAGTGT CGTCTATGAA GAATGAAGCC CAAGAGGAGG TTGTGGGAGA TGCCACAAAT
  CTACCATCTT CTTTGGGCTC TGGTGCATCA CCGCCTGACC AAGTCTTTCC TGTTGACTGC
  TTTCCTTGTG TGATGAGCCC CATCCCATCC AGCTACCATG CACCCTGGCA CTGGCTTTAA
  S
  CCCCATGGAC TTAGGTCTGG CCCTCTGATT CTCACTGAGT TTCTAAGCTG CCCCCACCCT
  ATCTTGATAA CCACGAGGAC TGCCTCTCAC TGCAGGATTC CCACACTTGG CAAAGTTGTC
  CCAACAAGAC TGGGGTGAGG ACTGGGCTTT TTCAGGGAGC CAGGGTCACA GAGAATTGCA
  GGTCTCGACT GAGCAGATGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12753149	M67455_578C_3	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8256977					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:14915135 () rs orientation: reverse

Symbol	Name	Function Class
Thbs2	thrombospondin 2	638 bp upstream
Tssr146500	transcription start site region 146500	774 bp upstream
Tssr146501	transcription start site region 146501	631 bp upstream