rs8256981 SNP Detail

Summary

• ID
  rs8256981
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:14914988 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CAACA AGACTGGGGT GAGGACTGGG
  M
  TTTTTCAGGG AGCCAGGGTC ACAGA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LP/J	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	SPRET/EiJ	WSB/EiJ
ss12753153	M67455_578C_7	ROCHEBIO	RPAMM	f	SNP	C		C	C	C	C	C	C		C	C	A	C					C		C	C			C
ss24753193	M67455_578C_10	ROCHEBIO	RPAMM	f	SNP	C		C	C	C	C	C	C		C	C	A	C			C		C		C	C			C
ss60540261	NES16561553	PERLEGEN	MM_PANEL2	r	SNP		G		G	G		G		G	G		T	G	G	G		T		G			G	T		G
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LP/J	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	SPRET/EiJ	WSB/EiJ
rs8256981					SNP	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	A	C	C	C	C	C	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60540261	NES16561553	PERLEGEN	MM_PANEL	r	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:14914988 () rs orientation: reverse

Symbol	Name	Function Class
Rr522558	regulatory region 522558	502 bp distal
Rr522559	regulatory region 522559	188 bp distal
Rr522560	regulatory region 522560	1943 bp proximal
Thbs2	thrombospondin 2	491 bp upstream
Tssr146500	transcription start site region 146500	627 bp upstream
Tssr146501	transcription start site region 146501	484 bp upstream