rs8257335 SNP Detail

Summary

• ID
  rs8257335
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  ChrX:133501039 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        AGCTC GAGTTAGAGA AACCATAGGA
  Y
  AGCTGAGGTG TTCCTGAACC CCCCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	BALB/cByJ	BALB/cJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12753558	U50715_AN290_3	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	BALB/cByJ	BALB/cJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8257335					SNP	T	T	T	T	T	T	T	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:133501039 () rs orientation: reverse

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi22942	CpG island 22942			786 bp proximal
Gla	galactosidase, alpha			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Hnrnph2	heterogeneous nuclear ribonucleoprotein H2			889 bp upstream
Rr406169	regulatory region 406169			693 bp upstream
Rr693597	regulatory region 693597			705 bp proximal
Rr693598	regulatory region 693598			1007 bp proximal
Tssr162002	transcription start site region 162002			921 bp upstream
Tssr162003	transcription start site region 162003			982 bp upstream
Tssr164150	transcription start site region 164150			within coordinates
Tssr164151	transcription start site region 164151			14 bp downstream
Tssr164152	transcription start site region 164152			638 bp downstream
Tssr164153	transcription start site region 164153			686 bp downstream
Tssr164154	transcription start site region 164154			851 bp downstream
Tssr164155	transcription start site region 164155			1218 bp downstream