rs8257378 SNP Detail

Summary

• ID
  rs8257378
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:133501777 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GCCTA GTTGCCTGAG AAACGATGAT
  K
  TCATTAGGAG TAGCTCATTG CTGAT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	BALB/cByJ	BALB/cJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12753604	U50715_AN306_1	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	BALB/cByJ	BALB/cJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8257378					SNP	G	G	G	G	G	G	G	G	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:133501777 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi22942	CpG island 22942	48 bp proximal
Gla	galactosidase, alpha	70 bp upstream
Hnrnph2	heterogeneous nuclear ribonucleoprotein H2	151 bp upstream
Rr406169	regulatory region 406169	within coordinates
Tssr162002	transcription start site region 162002	183 bp upstream
Tssr162003	transcription start site region 162003	244 bp upstream
Tssr164150	transcription start site region 164150	727 bp upstream
Tssr164151	transcription start site region 164151	694 bp upstream
Tssr164152	transcription start site region 164152	63 bp upstream
Tssr164153	transcription start site region 164153	38 bp upstream
Tssr164154	transcription start site region 164154	113 bp downstream
Tssr164155	transcription start site region 164155	480 bp downstream