rs8257379 SNP Detail

Summary

• ID
  rs8257379
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:133501665 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

             AACTAAAGCC AGGGGACAAA GCGCAAGCTC ACAGACCAGC CGCGTATCTC
  R
  GCTCAAAAGC TTCATGGCCA TAGAAATCCT TTGGTTCAGT TTCCCGAGTT           
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	SPRET/EiJ	WSB/EiJ
ss12753605	U50715_AN306_2	ROCHEBIO	RPAMM	f	SNP	A		A		A	A		A	A	A			A		A	A			G
ss38462407	NES09782341	PERLEGEN	MM_PANEL2	r	SNP		T	T	T	T		T		T	T	T	T		T			T	C		T
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/Lac	NZW/LacJ	PWD/PhJ	SPRET/EiJ	WSB/EiJ
rs8257379					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38462407	NES09782341	PERLEGEN	MM_PANEL	r	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:133501665 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi22942	CpG island 22942	160 bp proximal
Gla	galactosidase, alpha	within coordinates
Hnrnph2	heterogeneous nuclear ribonucleoprotein H2	263 bp upstream
Rr406169	regulatory region 406169	67 bp upstream
Tssr162002	transcription start site region 162002	295 bp upstream
Tssr162003	transcription start site region 162003	356 bp upstream
Tssr164150	transcription start site region 164150	615 bp upstream
Tssr164151	transcription start site region 164151	582 bp upstream
Tssr164152	transcription start site region 164152	12 bp downstream
Tssr164153	transcription start site region 164153	60 bp downstream
Tssr164154	transcription start site region 164154	225 bp downstream
Tssr164155	transcription start site region 164155	592 bp downstream