rs8257380 SNP Detail

Summary

• ID
  rs8257380
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:133499893 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CCATC AAGACCCCAG TGCCCTGCCT
  R
  GGTTCAAATT CTACGTTAGT GTGGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12753606	U50715_AN308_1	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8257380					SNP	A	A	A	A	A	A	A	A	A	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:133499893 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi22942	CpG island 22942	1932 bp proximal
Gla	galactosidase, alpha	within coordinates
Rr406169	regulatory region 406169	1839 bp upstream
Tssr164150	transcription start site region 164150	1109 bp downstream
Tssr164151	transcription start site region 164151	1160 bp downstream
Tssr164152	transcription start site region 164152	1784 bp downstream
Tssr164153	transcription start site region 164153	1832 bp downstream
Tssr164154	transcription start site region 164154	1997 bp downstream