rs8257480 SNP Detail

Summary

• ID
  rs8257480
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:78240793 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             TGCAGGCCAG TTTTCCTTAA CATCTCTTCA GCAGCCTCCT CCTCTCCACC
  CTCCATCNNT CTCCNTGNTC AGATATTTCC CCTCTGTCTT TGTTGCCCTA TCATATCCTC
  CTGATGGGCA GCTGCTCTCA GGCCTCCCTG TGTAACNAGA ATGTTTTCCC NTCTGTTGTT
  CACTGCAGTT CTCTGTGGAA GGGAAGCCCA TTGTGTTCTG TAGGACCCAG GTCCTTCTCT
  K
  GNGTGGCTCA GCCTTCCACA GNCCCAGTGN TGNTTGTGGC CANGAAGCCT NTTGAATNNT
  GGATNCTAGA CTGGCATGAG CATCCATTGC TCCTTCCAGG CCATTTTTAC ACAGTGCCCT
  GGGGGGCAAG ANCTACACAG CAAAA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SM/J	SPRET/EiJ
ss12753726	Gsta1_4_JC6043_6	ROCHEBIO	RPAMM	f	SNP	G	G		G	G	G	G	G					G	G			T
ss24752705	Gsta1_JC6043_7	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SM/J	SPRET/EiJ
rs8257480					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:78240793 () rs orientation: forward

Symbol	Name	Function Class
Gm70238	predicted gene, 70238	within coordinates
Gsta2	glutathione S-transferase, alpha 2 (Yc2)	Intron
Tssr2946	transcription start site region 2946	204 bp downstream