rs8257485 SNP Detail

Summary

• ID
  rs8257485
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:78240844 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T GCAGGCCAGT TTTCCTTAAC ATCTCTTCAG CAGCCTCCTC
  CTCTCCACCC TCCATCNNTC TCCNTGNTCA GATATTTCCC CTCTGTCTTT GTTGCCCTAT
  CATATCCTCC TGATGGGCAG CTGCTCTCAG GCCTCCCTGT GTAACNAGAA TGTTTTCCCN
  TCTGTTGTTC ACTGCAGTTC TCTGTGGAAG GGAAGCCCAT TGTGTTCTGT AGGACCCAGG
  TCCTTCTCTN GNGTGGCTCA GCCTTCCACA GNCCCAGTGN TGNTTGTGGC CANGAAGCCT
  R
  TTGAATNNTG GATNCTAGAC TGGCATGAGC ATCCATTGCT CCTTCCAGGC CATTTTTACA
  CAGTGCCCTG GGGGGCAAGA NCTACACAGC AAAA                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SM/J	SPRET/EiJ
ss12753731	Gsta1_4_JC6043_11	ROCHEBIO	RPAMM	f	SNP	G	G		G		G	G	G					G	G			A
ss24752711	Gsta1_JC6043_13	ROCHEBIO	RPAMM	f	SNP	G	G	G	G		G	G	G	G	G	G		G	G	G	G	A
ss24757323	Gsta1_JC5986_6	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SM/J	SPRET/EiJ
rs8257485					SNP	G	G	?	G	A	G	G	G	?	?	?	A	G	G	G	?	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:78240844 () rs orientation: forward

Symbol	Name	Function Class
Gm70238	predicted gene, 70238	within coordinates
Gsta2	glutathione S-transferase, alpha 2 (Yc2)	Intron
Tssr2946	transcription start site region 2946	255 bp downstream