rs8257486 SNP Detail

Summary

• ID
  rs8257486
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:78240851 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTGTTACC CTATCATAAC
  CTCCTGATGG GCAGCTGCTC TCAGGCCTCC CTGTGTAACA GAATGTTTTC CCATCTGTTG
  TTCACTGCAG TTCTCTGTGG AAGGGAAGCC CATTGTGTTC TGTAGGACCC AGGTCCTTCT
  CTGGTGTGGC TCAGCCTTCC ACAGGCCCAG TGCTGGTTGT GGCCAAGAAG CCTGTTGAAT
  K
  CTGGATACTA GACTGGCATG AGCATCCATT GCTCCTTCCA GGCCATTTTT ACACAGTGCC
  CTGGGGGGCA AGAGCTACAC AGCAGGCTCA TGGAAGTGAA GGCCAGTGTA GCAGTAGCCT
  TTGTCTCCCA GCCTCTGCCT TTCTCTTGTC CCTGAAACTC AGTGTCCCCA GACTTCAAAG
  AGCCTACTTA CCTTTTCAAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SM/J	SPRET/EiJ
ss12753732	Gsta1_4_JC6043_12	ROCHEBIO	RPAMM	f	SNP	T		T	T	T	T	T				T	T			G
ss24752712	Gsta1_JC6043_14	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G
SNP Consensus Information
SNP					Consensus Type	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SM/J	SPRET/EiJ
rs8257486					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:78240851 () rs orientation: forward

Symbol	Name	Function Class
Gm70238	predicted gene, 70238	within coordinates
Gsta2	glutathione S-transferase, alpha 2 (Yc2)	within coordinates
Tssr2946	transcription start site region 2946	262 bp downstream