rs8257626 SNP Detail

Summary

• ID
  rs8257626
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:4091873 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              TTTGCACCAG GAGCCTGGGA
  CGGGGTGTGG GGAACAAATC AGAAAAGGGA CCCGGGAGAT GGAGCGGGAA AGTGCACCAC
  ACTGAACCCT AATCATTCCC CTTCTTCTAC CTAACATTCT TCTCCTGTCC CCCAGTGCCG
  CCGTACACCA TTGTCTACTT CCCAAGTCCA GGTAGGAGCT AATGACTGCA GGAAGGGGAG
  S
  TCTGGGGTAG GGGTTGCAGC CCACCATTCC TATCTGCCAT GGAGAAATTG CAATTCATCA
  TTAATCCTCC TGGTTGCAAG GCTCTACTTC CCTCACCATG GCCAGTCAGT CCTTGTACTC
  GAAATTGCTT TGAGGCTGGG CCTTTACACT ATCCCCCAAA TCCTTACCCT GACTCCATAC
  AGGGCGGTGT GAGGCCATGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	LP/J	MRL/MpJ	NZW/Lac	SM/J	SPRET/EiJ
ss12753881	Gstp1_1_JC6074_7	ROCHEBIO	RPAMM	f	SNP	G	G		G		G	G	G	G	G	G			G			C
ss24747286	Gstp1_JC6074_4	ROCHEBIO	RPAMM	r	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	LP/J	MRL/MpJ	NZW/Lac	SM/J	SPRET/EiJ
rs8257626					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:4091873 () rs orientation: reverse

Symbol	Name	Function Class
Gstp2	glutathione S-transferase, pi 2	within coordinates
Rr357953	regulatory region 357953	1128 bp proximal
Rr363269	regulatory region 363269	within coordinates
Tssr157438	transcription start site region 157438	357 bp downstream
Tssr157439	transcription start site region 157439	370 bp downstream