rs8257629 SNP Detail

Summary

• ID
  rs8257629
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  118
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:4090867 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                                     AGG GATCAGTCAT
  GCTGTCTCTC CCAACCCGCA GGGCTTTATG GGAAAAACCA GAGGGAGGCC GCCCAGGTGG
  ATATGGTGAA TGATGGGGTG GAGGACCTTC GCGGCAAATA TGGCACCATG ATCTACAGAA
  ACTATGTGAG CCTGAATCTG GGGGGTAGGG TANCCCAGGA AGTAGGTAGT GGTAGGCCAT
  GTCCCTGGGG GGGGGGGGTA TATCTGGAAT TCATTACAGG GCAGCAGGAG TCCAGTGCCC
  W
  GGGCACTGTG ACAGTGGGAG GATGGTACAT CTTTGGGTGT CTCCCTGGCA GGAGAATGGN
  AAGAATGACT ACGNGAAGGN CCCTGCCTGG G                               
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	NZB/BlNJ	SPRET/EiJ
ss12753891	Gstp1_1_JC6077_1	ROCHEBIO	RPAMM	f	SNP	A	A	T	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	NZB/BlNJ	SPRET/EiJ
rs8257629					SNP	A	A	T	A	A	A	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:4090867 () rs orientation: reverse

Symbol	Name	Function Class
Gstp2	glutathione S-transferase, pi 2	Intron
Rr542599	regulatory region 542599	546 bp proximal
Rr542600	regulatory region 542600	1155 bp proximal
Rr542601	regulatory region 542601	1386 bp proximal
Tssr157438	transcription start site region 157438	1363 bp downstream
Tssr157439	transcription start site region 157439	1376 bp downstream