rs8258264 SNP Detail

Summary

• ID
  rs8258264
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:80636287 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        AAGAG CATTGTCTAC ATCTTTGAAA
  R
  CTACTAAGAG ACACATTCCC AGAGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	BALB/cJ	C57BL/6J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12754557	X83733_MC1125_14	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	BALB/cJ	C57BL/6J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8258264					SNP	G	G	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:80636287 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi1908	CpG island 1908	916 bp distal
Plekhj1	pleckstrin homology domain containing, family J member 1	1883 bp upstream
Rr435394	regulatory region 435394	1838 bp distal
Rr435395	regulatory region 435395	1711 bp distal
Rr435396	regulatory region 435396	962 bp distal
Sf3a2	splicing factor 3a, subunit 2	within coordinates
Tssr94608	transcription start site region 94608	1837 bp downstream
Tssr94609	transcription start site region 94609	1811 bp downstream
Tssr94610	transcription start site region 94610	1696 bp downstream
Tssr94611	transcription start site region 94611	1501 bp downstream
Tssr94612	transcription start site region 94612	1945 bp upstream
Tssr98513	transcription start site region 98513	1877 bp upstream
Tssr98514	transcription start site region 98514	1555 bp upstream