rs8258265 SNP Detail

Summary

• ID
  rs8258265
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:80636285 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              GTGTCTGGGA CAGACAGGAC
  ACTGATACCA CTGGCTGTCA AAGAGAAAGA GGCTAGAATG CAAAGGATAC AAGATGCTCT
  AGATGCCGAG AGAATGGCTG AAAGATGTAT ATGGAAGTGG TGGGGCAGAA CCAGCTTGTC
  GGATGTTTCA TACTCAGCCA CTTAAGGACT GAAAAGAGCA TTGTCTACAT CTTTGAAAGC
  W
  ACTAAGAGAC ACATTCCCAG AGATGAAGTT GGCCAGATGC AAGAGCAGAG TCTAAGGGTG
  GCAGCATGGG CTTCTCAGAG CAAGAGGGCA CCCGCAACAG CAGGATGGAA AACCACTTCA
  ACCGCTGGCA AAGACAACTT TCAAGAACAT AGGACTCTAT ACCTGGCCTC TGCAGGGAGC
  CTGGGTATCC AGCCACAGAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cJ	C57BL/6J	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12754558	X83733_MC1125_15	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	BALB/cJ	C57BL/6J	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8258265					SNP	T	T	T	T	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:80636285 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi1908	CpG island 1908	914 bp distal
Plekhj1	pleckstrin homology domain containing, family J member 1	1881 bp upstream
Rr435394	regulatory region 435394	1836 bp distal
Rr435395	regulatory region 435395	1709 bp distal
Rr435396	regulatory region 435396	960 bp distal
Sf3a2	splicing factor 3a, subunit 2	within coordinates
Tssr94608	transcription start site region 94608	1835 bp downstream
Tssr94609	transcription start site region 94609	1809 bp downstream
Tssr94610	transcription start site region 94610	1694 bp downstream
Tssr94611	transcription start site region 94611	1499 bp downstream
Tssr94612	transcription start site region 94612	1947 bp upstream
Tssr98513	transcription start site region 98513	1875 bp upstream
Tssr98514	transcription start site region 98514	1553 bp upstream