rs8258278 SNP Detail

Summary

• ID
  rs8258278
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:80639164 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TAAAG TGAGGGAGGG CAACCCAACC
  Y
  AGCACTCTAT GCAGGGGCAG CTGTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	BALB/cJ	C57BL/6J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12754572	X83733_MC1129_1	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	BALB/cJ	C57BL/6J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8258278					SNP	C	C	C	C	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:80639164 () rs orientation: reverse

Symbol	Name	Function Class
Amh	anti-Mullerian hormone	1913 bp upstream
Rr366747	regulatory region 366747	1621 bp upstream
Rr435397	regulatory region 435397	1317 bp proximal
Sf3a2	splicing factor 3a, subunit 2	within coordinates
Tssr94612	transcription start site region 94612	927 bp downstream
Tssr94613	transcription start site region 94613	508 bp downstream
Tssr94614	transcription start site region 94614	38 bp downstream
Tssr94615	transcription start site region 94615	271 bp upstream
Tssr94616	transcription start site region 94616	315 bp upstream
Tssr94617	transcription start site region 94617	333 bp upstream
Tssr94618	transcription start site region 94618	707 bp upstream
Tssr94619	transcription start site region 94619	738 bp upstream
Tssr94620	transcription start site region 94620	770 bp upstream
Tssr94621	transcription start site region 94621	794 bp upstream
Tssr94622	transcription start site region 94622	881 bp upstream
Tssr94623	transcription start site region 94623	1390 bp upstream
Tssr94624	transcription start site region 94624	1903 bp upstream
Tssr98515	transcription start site region 98515	697 bp downstream