rs8258285 SNP Detail

Summary

• ID
  rs8258285
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  118
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:80641065 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CCCCT GCATGGTGGT ACAGCAAGGT
  Y
  CGGGTGGCCC TGCTTATATG TATGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	A/J	BALB/cByJ	BALB/cJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
ss12754581	X83733_MC1132_2	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/HeJ	A/J	BALB/cByJ	BALB/cJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/Lac	SPRET/EiJ
rs8258285					SNP	C	C	C	C	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:80641065 () rs orientation: reverse

Symbol	Name	Function Class
Amh	anti-Mullerian hormone	12 bp upstream
Cpgi1909	CpG island 1909	1147 bp proximal
Rr366747	regulatory region 366747	within coordinates
Rr435397	regulatory region 435397	563 bp distal
Rr435398	regulatory region 435398	830 bp proximal
Rr435399	regulatory region 435399	1867 bp proximal
Sf3a2	splicing factor 3a, subunit 2	309 bp downstream
Tssr94614	transcription start site region 94614	1939 bp downstream
Tssr94615	transcription start site region 94615	1614 bp downstream
Tssr94616	transcription start site region 94616	1571 bp downstream
Tssr94617	transcription start site region 94617	1549 bp downstream
Tssr94618	transcription start site region 94618	1168 bp downstream
Tssr94619	transcription start site region 94619	1141 bp downstream
Tssr94620	transcription start site region 94620	1113 bp downstream
Tssr94621	transcription start site region 94621	1081 bp downstream
Tssr94622	transcription start site region 94622	1004 bp downstream
Tssr94623	transcription start site region 94623	491 bp downstream
Tssr94624	transcription start site region 94624	2 bp upstream
Tssr94625	transcription start site region 94625	897 bp upstream
Tssr94626	transcription start site region 94626	1168 bp upstream
Tssr94627	transcription start site region 94627	1599 bp upstream
Tssr98515	transcription start site region 98515	1160 bp upstream